• EyeMol is an application to visualize and perform data-driven triage on molecule datasets. Its main strength lies in the visualization of the complete dataset at all times and its simple manipulation (pan, zoom, rotate, etc.)
  • Experimental or in-silico properties attached to the molecules like IC50, MW, logP, among many others, are easily used to color, search and cluster the molecules. Each molecule can be annotated.
  • Using EyeMol doesn’t require molecular modeling knowledge, making it an ideal tool for chemists and project managers.

  • Global vision of a dataset. All molecules are visible at once !
  • Group molecules by any property or by similarity
  • No limit on the number of groups or number of molecules
  • Drag and drop molecules from group to group
  • Create group inside groups
  • Display numerical properties along the molecule
  • Sort molecules inside groups by any property
  • Color molecule cells by property
  • Substructure search
  • Lightweight graphic mode for large set of molecules
  • A zoomed window to display currently selected molecule
  • Property height & 3D colored bar graphs
  • Multiple views on the same dataset
  • Minimap for quick navigation
  • Cluster representative views
  • Spreadsheet mode
Download and Installation
For the time being, we are only distributing EyeMol in its Windows version. Please get in touch through our contact page, should you need a Linux version. We will be happy to help on this.

Download EyeMol from here:

Unzip it to any directory of your choice and click the EyeMol.exe file in order to start EyeMol. A licence window will appear stating that no licence file was found in your installation and asking to send us an email with a licence request code:


If you click on the “Send email” link, your mailer by default (herein Outlook) will open with the following email content:


Please fill carefully the different fields. The complex code at the end of the email allows us to uniquely identify your computer in order to generate a unique licence activation key tied to it. If you need to activate several EyeMol licences, please repeat this protocol as many times as needed. In return of your email, we will send you a licence file called machine.lic that you need to store in the same directory as EyeMol.

That’s all ! Now you are ready to run EyeMol. If everything went right, you should see the main EyeMol window, as follows:

Beta Testers
We’re looking for Beta Testers!

EyeMol is in continuous development. We are currently running the beta test of EyeMol first commercially available version. If you would like to help us improving EyeMol, please apply as a Beta Tester. Our testers will be granted with a free EyeMol licence for a period of four months, freely renewable twice (a full year in total.) In return, we ask you to provide feedback and bug reports at least once before every renewal. If you feel up to the task, please get in touch through the contact page.

We are here to help you during the learning phase of EyeMol and for any question arising during the every day use too. Should you like to know more about EyeMol, please get in touch through the contact page.
Manual and Online Tutorial
Click here to visit EyeMol text and video tutorials !


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EyeMol, Pikaïros, Toulouse,France, FR22529460115,